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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atctgaagttgtactgtaattttgtatattctcgagcttcagatatctgtctctcctaatgtttctgacggctttacattgttcaaattttcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGGAGAACAACGCGCAACCCACGTCCGTGGATCGCCCTAACTCTCTGCCGAA

Basic information

species Oryza sativa
transcript LOC_Os01g49820.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88273527|gb|CI393933.1|CI393933
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|88275671|gb|CI396275.1|CI396275
EST:     ATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: ATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|88516696|gb|CI444350.1|CI444350
EST:     TGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|33687573|gb|CF315812.1|CF315812
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|88275981|gb|CI396585.1|CI396585
EST:     TTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|27547046|gb|CA765107.2|CA765107
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|25807069|gb|CA763030.1|CA763030
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTTTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
EST: gi|5771042|gb|AU077931.1|AU077931
EST:     TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACG                         GATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG
genomic: TTCTTCATTTTGCTACCTCCAATTTTTTCCAATGCCATCTGATGAAAACGgtatgcttca ... tcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgtctctcctaatgtttctgacggctttacattgttcaaattttcgatgacagGATTATGGCCTCACGCATACGCCCGGCACATTCTCAACCCTGATCAGCTGGAGAACAACGCGCAACCCACGTCCGTGGATCGCCCTAACTCTCTGCCGAA
                 ttctgac  putative branch site (score: 2)
                                          ttttc  putative PPT
                                attgttcaaatttt  TA-rich tract