1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttagtccctgcccttatttgtgtagctagtactaattactacttccaaagcaaacttgtatcccactcaacatttgcatattgaacaacctgtggcatatcgtttgagctgtctcaaacatgtcattttattgattgtttgcagTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAG
species | Oryza sativa |
transcript | LOC_Os01g49060.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GATGGAACGAGTTACATGTCGCT--CAACTGTTGTTTTCACTACCGACGG TCCCTACTGCTTGCATTACTAGACAGTTGCCEST: gi|86594939|gb|CI258193.1|CI258193
genomic: GATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGGgttagtccct ... ttgtttgcagTCCCTACTGCTTGCATTACTAGACAGTTGCC
EST: GATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGG TCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATEST: gi|29681676|gb|CB677951.1|CB677951
genomic: GATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGGgttagtccct ... ttgtttgcagTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGAT
EST: GATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGG TCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGAT
genomic: GATGGAACGAGTTACATGTCGCTGACAACTGTTGTTTTCACTACCGACGGgttagtccct ... ttgtttgcagTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGAT
ctgtggcatatcgtttgagctgtctcaaacatgtcattttattgattgtttgcagTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAG
tattgat putative branch site (score: 3)
attttattgattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtccctgcccttatttgtgtagctagtactaattactacttccaaagcaaacttgtatcccactcaacatttgcatattgaacaacctgtggcatatcgtttgagctgtctcaaacatgtcattttattgattgtttgcagTCCCTACTGCTTGCATTACTAGACAGTTGCCATGTAGAGGACACAGAAGATTCCCTTGATAGGAAGTCAGAAGTTCATTTACTGTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG