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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgctgcatcctattctgagttgcataattccattctagtgtgtttttcaatgttctttttaatggaaactgacaaactgttgctaaatgctaactgcattacagGTGTGGAAATTCTCGATTACTTTTGCTGATGTTCTCGGGCTTTCTTCAGTTACATTTGATGAATTTGTTCAGTCTCTTCATGATTAT

Basic information

species Oryza sativa
transcript LOC_Os01g48180.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g48180.1 (Oryza sativa), 3'ss of exon 7
lower sequence: AC196465.3_FGT006 (Zea mays), 3'ss of exon 2
gtaaatgctgcatcctattctgagttgcataattccattctagtgtgtttttcaatgttct--ttttaatggaaactgacaaactgttgctaaatgctaactgcattacagGTGTGGAAATTCTCGATTACTTTTGCTGATGTTCTCGGGCTTTCTTCAGTTACATTTGATGAATTTGTTCAGTCTCTTCATGATTAT
         |  | | ||| | | |    | |   || |    ||| | | |  ||  | |  | |  |||| |  ||  | |  |   ||   ||||||||| | | ||||||||||||||||  ||||||||  |||||||||| || |||| | |||||||| ||||||| ||||||||||||||||||||||||
--------cgttttcaatttttaatacattgacatcaattctatgtttgtctatatactatagtatctatggtatttg-tataacgccact--ttgctaactggactgcagGTGTGGAAATTCTTAATTACTTTCACTGATGTTCTGGGTCTTTGTCCAGTTACACTTGATGAGTTTGTTCAGTCTCTTCATGATTAT

upper sequence: LOC_Os01g48180.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G159357_T01 (Zea mays), 3'ss of exon 8
---------------------------------------gtaaatgctgcatcctattctgagttgcataattccattctagtgtgtttttcaatgttcttttta---atggaaactgacaaactgttgctaaatgctaactgcattacagGTGTGGAAATTCTCGATTACTTTTGCTGATGTTCTCGGGCTTTCTTCAGTTACATTTGATGAATTTGTTCAGTCTCTTCATGATTAT
                                       ||||||| |  |   ||   |||  | ||   ||   ||    |||||  || | | |   |  ||   ||  ||  | |      |   |    ||||||||| ||| ||||||||||||||||  ||||||||  |||||||||| || |||| | ||||||                                   
ttatcttcccttatgcttctctctatctctagtacacgtgtaaatgttttaa--tacaatgacat-caagtttatgtttgtctgtgtactttagtatctatggTATTCATATAATTTCATCTCAGGAGACATTTTGCTAACTGGATTGCAGGTGTGGAAATTCTTAATTACTTTCACTGATGTTCTGGGTCTTTGTCCAGTTA-----------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgttctttttaatggaaactgacaaactgttgctaaatgctaactgcattacagGTGTGGAAATTCTCGATTACTTTTGCTGATGTTCTCGGGCTTTCTTCAGTTACATTTGATGAATTTGTTCAGTCTCTTCATGATTAT
                                      tgctaac  putative branch site (score: 1)
      tttttaat  TA-rich tract