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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttgcttggctacactttattatttgttcttcactgaactgatatgagtaaaatttgatctcgttatatctgtctgttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTGGAGGAGTTGCTTTGTCTATGTACAACACTGATGAG

Basic information

species Oryza sativa
transcript LOC_Os01g46610.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46610.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G033515_T01 (Zea mays), 3'ss of exon 7
-------------------------------------------------------------------gtatggt-tgcttggctacact--ttattatttgttcttcactgaactgatatgagt-aaaatttgatctcgttatatctgtctgttc---ttaca--------gAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTGGAGGAGTTGCTTTGTCTATGTACAACACTGATGAG
                                                                    |||    ||| ||  | || |  || | | ||||  ||||  |  | | | ||||  |||||||||| |   ||  | ||  ||||    |||||        |||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
gtatggctgcctatatcacctcattaaactgaacttcttaacattttttttatttcacagcttcacattatcacctgcatgattgcattgtttgtcaattgtcattcagagggcggttgtgagccaaaatttgatatt-ctacttttgcttgtttcctttacaattggtaagAGGGAAAAGAAGAACAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACTGATGAG

upper sequence: LOC_Os01g46610.1 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G432128_T01 (Zea mays), 3'ss of exon 7
-----------------------------------------------------------------------gtatggttgcttggctacactttattatttgttcttcactgaactgatatgagt-aaaatttgatctcgttatatctgtctgttctt----------acagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTGGAGGAGTTGCTTTGTCTATGTACAACACTGATGAG
                                                                         ||  |  | |   |  | |  |||||||||  || |  || |||||  |||  ||||||| |||   |  | | |   ||||               ||||||||| || || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || |||
gtatggacatatggttgcctacatcagatcattaaactggatttcttaacagttttttctttcgcagattcacattatgtcctatatg-attgcattatttgtcatttagagagctgatgcgagccaaaatttaatcctctatttttttcttgtttccttctcaattggtagAGGGAAAAGAAGAACAGATTGATCTGGAGGTATTCAACTTCACTGGTGCTGGAGGAGTTGCCTTGTCTATGTACAACACCGACGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675350|gb|CB671625.1|CB671625
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58674419|gb|CK063105.1|CK063105
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|572311|gb|D41822.1|D41822
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58607291|gb|CK035324.1|CK035324
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCA
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCA
EST: gi|58681851|gb|CK070538.1|CK070538
EST:     GGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: GGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58681761|gb|CK070448.1|CK070448
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58685196|gb|CK073883.1|CK073883
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|29643695|gb|CB648702.1|CB648702
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58586908|gb|CF985216.1|CF985216
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58601771|gb|CK012299.1|CK012299
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|22546869|gb|BU099180.1|BU099180
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58686068|gb|CK074755.1|CK074755
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58688143|gb|CK076830.1|CK076830
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58607758|gb|CK035791.1|CK035791
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATC
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATC
EST: gi|29681045|gb|CB677320.1|CB677320
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|2310583|gb|C26738.1|C26738
EST:     TGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: TGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|33796466|gb|CF324100.1|CF324100
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|33678138|gb|CF306377.1|CF306377
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAG
EST: gi|58591977|gb|CF990285.1|CF990285
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58684521|gb|CK073208.1|CK073208
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58668052|gb|CK056738.1|CK056738
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|33676653|gb|CF304892.1|CF304892
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|33795162|gb|CF323454.1|CF323454
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58662930|gb|CK051616.1|CK051616
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTCG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|33676462|gb|CF304701.1|CF304701
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAG
EST: gi|58678891|gb|CK067578.1|CK067578
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|163918210|gb|EG714014.1|EG714014
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|29612963|gb|CB617976.1|CB617976
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58688036|gb|CK076723.1|CK076723
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58656783|gb|CK045463.1|CK045463
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAG
EST: gi|33676140|gb|CF304379.1|CF304379
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58600685|gb|CK011213.1|CK011213
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|29612961|gb|CB617974.1|CB617974
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58587829|gb|CF986137.1|CF986137
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58682904|gb|CK071591.1|CK071591
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58658151|gb|CK046831.1|CK046831
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCA
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCA
EST: gi|29663182|gb|CB659457.1|CB659457
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58611952|gb|CK039664.1|CK039664
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGT
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGT
EST: gi|33796234|gb|CF323983.1|CF323983
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTNGATCTGGAGGTGTTCAACTTCACTGGTGCT
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATT-GATCTGGAGGTGTTCAACTTCACTGGTGCT
EST: gi|33795371|gb|CF323556.1|CF323556
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATNTGGNAGGTGTTCAACTTCACTGGTNGC
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGG-AGGTGTTCAACTTCACTGGT-GC
EST: gi|58658238|gb|CK046918.1|CK046918
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|29671744|gb|CB668019.1|CB668019
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58693456|gb|CK082143.1|CK082143
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58662619|gb|CK051305.1|CK051305
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58675276|gb|CK063963.1|CK063963
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58689712|gb|CK078399.1|CK078399
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|38473345|gb|CF957477.1|CF957477
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|33676366|gb|CF304605.1|CF304605
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58681694|gb|CK070381.1|CK070381
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|11442840|gb|BF430739.1|BF430739
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|33676128|gb|CF304367.1|CF304367
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|29674012|gb|CB670287.1|CB670287
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|58676638|gb|CK065325.1|CK065325
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCA
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCA
EST: gi|58665202|gb|CK053888.1|CK053888
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|29635286|gb|CB640295.1|CB640295
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGGAGGTGTTCAACTTCACTGGTGCT
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGG-AGGTGTTCAACTTCACTGGTGCT
EST: gi|58605729|gb|CK033762.1|CK033762
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATG
EST: gi|2309888|gb|C26043.1|C26043
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|117251413|gb|CT844156.1|CT844156
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|88743066|gb|CI766574.1|CI766574
EST:     GGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: GGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|33680077|gb|CF308316.1|CF308316
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTCCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
EST: gi|33795997|gb|CF323866.1|CF323866
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCCTGGAGGTGTTCAACTTCACTGGTGCT
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATC-TGGAGGTGTTCAACTTCACTGGTGCT
EST: gi|58681524|gb|CK070211.1|CK070211
EST:     AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTG                         AGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG
genomic: AGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 74 (downstream exon)
Score: 182

TGGACTAAGCCCATTTGCATTGGAAGGCATGCTTTTGGTGATCAGTACCGAGCAACTGATGCAGTTCTGAAGGGGCCTGGCAAGCTCAAGCTGGTTTTTGgtatggttgc ... gttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTGGAGGAGTTGCTTTGTCTATGTACAACACTGATGAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactgaactgatatgagtaaaatttgatctcgttatatctgtctgttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTGGAGGAGTTGCTTTGTCTATGTACAACACTGATGAG
                                          tctgttctt  CT-rich tract
           atatgagtaaaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggttgcttggctacactttattatttgttcttcactgaactgatatgagtaaaatttgatctcgttatatctgtctgttcttacagAGGGAAAGGATGAGCAGATTGATCTGGAGGTGTTCAACTTCACTGGTGCTGGAGGAGTTGCTTTGTCTATGTACAACACTGATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG