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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcacttttttgcatatgcatatgtttttgttctttcactatcatcttaatagcattgcctaacagttcagcacatatcttggttaacctaatttgttttatgtgtcttcctcaagGCTCATGATGGAGGTGTAGTTGCAGTTGAACTTTCACGGGTAATGGGAAGTGCTCCACAACTCATTACAATAGGGGCTGACAAAACTTTAGCCATATGGG

Basic information

species Oryza sativa
transcript LOC_Os01g46510.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46510.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G000177_T01 (Zea mays), 3'ss of exon 7
----------------------gtagcacttttttgcatatgcatatgtttttgttctttcactatcatcttaatagcattgcctaacagt--tcagcacatatcttggttaacctaatttgttttatgtgtcttcctcaagGCTCATGATGGAGGTGTAGTTGCAGTTGAACTTTCACGGGTAATGGGAAGTGCTCCACAACTCATTACAATAGGGGCTGACAAAACTTTAGCCATATGGG
                        | |  || |||   |||    |    |    | || ||  |      |||     |||   |||| |  | ||||      | ||||||  || | | |||   || | || |||||||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||
gtattgacttgctgacttcagttcaccgattatttatgtatcagaaaaaataaaatgttgcagaacgtctgtaaattacttgtacaacattacttagcatgcgagtaggttaa--tactgtttttggggtat-tttctcaagGCCCATGATGGAGGTGTAGTTGCAGTTGAACTTTCAAGGGTGATGGGGAGTGCTCCACAGCTCATTACAATAGGGGCTGATAAAACTTTAGCCATATGGG

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 3'ss of exon 7
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 3'ss of exon 7
gtagcacttttttgcatatgcatatgtttttgttctttcactatcatcttaatagcattgcctaacagttcagcacatatcttggttaacctaatttgttttatgtgtcttcctcaagGCTCATGATGGAGGTGTAGTTGCAGTTGAACTTTCACGGGTAATGGGAAGTGCTCCACAACTCATTACAATAGGGGCTGACAAAACTTTAGCCATATGGG
               |  ||  |   |  ||     ||| || | ||  |  |    ||   |        |   | |   | | ||   ||||| | |||  | ||  |   | | ||| |||||||| || || || || ||||| || ||| ||||||  || |||||||||||| | |||||||| ||||||||||| || || ||||||||||
---------------aattgagtggataatttccacttctctgttatact--ttttttttttttttttcctaatcccttcttggcttcttctaatgtttttgttctgattgtatta-gGCACATGATGGTGGGGTGGTGGCTGTTGAGCTGTCAAGGGTAAGTGGGAGTGCTCCACAATTGATTACAATTGGGGCTGACAAGACATTGGCCATATGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacagttcagcacatatcttggttaacctaatttgttttatgtgtcttcctcaagGCTCATGATGGAGGTGTAGTTGCAGTTGAACTTTCACGGGTAATGGGAAGTGCTCCACAACTCATTACAATAGGGGCTGACAAAACTTTAGCCATATGGG
                                          tgtcttcctc  CT-rich tract
                            taatttgttttatgt  TA-rich tract