1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acacccataaaacctggaaattttgttttgactaggtaatgtatttatatttacttaatgcaataaatggaggctgattggtatatgctgctatatgcagGAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGGACAATAAATTGGATTTTTGATTTTCTAGTTTTACCAAAATTATATTTTA
species | Oryza sativa |
transcript | LOC_Os01g44310.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAG GAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGGEST: gi|38480580|gb|CF964669.1|CF964669
genomic: CTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtacattatt ... ctatatgcagGAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGG
EST: TTTGTGAGAAGGTG-TTGATCTTCTTAAG GAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGGEST: gi|29617071|gb|CB622083.1|CB622083
genomic: TTTGTGAGAAGGTGTTTGATCTTCTTAAGgtacattatt ... ctatatgcagGAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGG
EST: CTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAG GAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGGEST: gi|58589020|gb|CF987328.1|CF987328
genomic: CTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtacattatt ... ctatatgcagGAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGG
EST: CTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAG GAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGGEST: gi|29621424|gb|CB626435.1|CB626435
genomic: CTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtacattatt ... ctatatgcagGAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGG
EST: CTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAG GAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGG
genomic: CTACAATCAGACAGAAATATATTTGTGAGAAGGTGTTTGATCTTCTTAAGgtacattatt ... ctatatgcagGAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGG
tatatttacttaatgcaataaatggaggctgattggtatatgctgctatatgcagGAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGGACAATAAATTGGATTTTTGATTTTCTAGTTTTACCAAAATTATATTTTA
ggctgat putative branch site (score: 16)
ttaatgcaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacccataaaacctggaaattttgttttgactaggtaatgtatttatatttacttaatgcaataaatggaggctgattggtatatgctgctatatgcagGAGGCATGGAACAAATTCAATTCCGAAGAGCGATAGCTCGGGATGTAGGGGACAATAAATTGGATTTTTGATTTTCTAGTTTTACCAAAATTATATTTTA
- - - - - -acctgga
- - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgctg