1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaacatgttttcagtatagtccctggaattacttttcttgtaattttttttcttagttcaatcttgaagagtttattagccttgctgtaaaattataggaccttggaacatgatcttttttatgttatgcataccttaatcagatgtatttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
species | Oryza sativa |
transcript | LOC_Os01g42260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG GGTCTAATCAAGGTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACGEST: gi|88342451|gb|CI645973.1|CI645973
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACGEST: gi|87006683|gb|CI285717.1|CI285717
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACGEST: gi|88336511|gb|CI656782.1|CI656782
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACGEST: gi|58608936|gb|CK036969.1|CK036969
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGEST: gi|58676165|gb|CK064852.1|CK064852
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAG
EST: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACGEST: gi|88290429|gb|CI665218.1|CI665218
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
EST: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAG GGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
genomic: TTTGACACCAAGGTCAGCAGGTCCTGAGGGGTCATTTATTGGTGTCCAAGgtaacatgtt ... tttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
tggaacatgatcttttttatgttatgcataccttaatcagatgtatttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
ccttaat putative branch site (score: 10)
tattttt putative PPT
atcttttttatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatgttttcagtatagtccctggaattacttttcttgtaattttttttcttagttcaatcttgaagagtttattagccttgctgtaaaattataggaccttggaacatgatcttttttatgttatgcataccttaatcagatgtatttttaacagGGTCTAATCAAGCTGGAAACAATTTGACTCTGAAAGGATGGCCACTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG