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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctttaaacattagtctgggagtgggatttctcctttctgaattttcgtttctgtttcatgggtagtatttttttagtgatcacgcattgttttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGGTGGAACCCTCTGTTCTAGTAGTATCCAAGTGCAACCTCTCTTTCATTAT

Basic information

species Oryza sativa
transcript LOC_Os01g34620.6
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33688088|gb|CF316327.1|CF316327
EST:     TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC                         AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
genomic: TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCACgtgagcttta ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
EST: gi|86501844|gb|CI144477.1|CI144477
EST:     TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC                         AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
genomic: TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCACgtgagcttta ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
EST: gi|86510934|gb|CI153567.1|CI153567
EST:     TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC                         AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
genomic: TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCACgtgagcttta ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
EST: gi|33662135|gb|CF293102.1|CF293102
EST:     TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC                         AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCCTTTCATGTAAGGATGG
genomic: TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCACgtgagcttta ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
EST: gi|86825099|gb|CI358251.1|CI358251
EST:     GAACAAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC                         AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
genomic: GAAC-AAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCACgtgagcttta ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
EST: gi|38477159|gb|CF961292.1|CF961292
EST:     TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC                         AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT
genomic: TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCACgtgagcttta ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT
EST: gi|86431345|gb|CI084956.1|CI084956
EST:     TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCAC                         AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG
genomic: TGAACAAAACGAATCATCATGAAGAAGATATAGTACGCCATTTTTGTCACgtgagcttta ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctgtttcatgggtagtatttttttagtgatcacgcattgttttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCATGTAAGGATGGTGGAACCCTCTGTTCTAGTAGTATCCAAGTGCAACCTCTCTTTCATTAT
                                        ttgtttttt  CT-rich tract
                tagtatttttttagt  TA-rich tract