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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccatttttgtcacgtgagctttaaacattagtctgggagtgggatttctcctttctgaattttcgtttctgtttcatgggtagtatttttttagtgatcacgcattgttttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT

Basic information

species Oryza sativa
transcript LOC_Os01g34620.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38481052|gb|CF965141.1|CF965141
EST:     TGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATA                         AACCAAGTATGGATTTGCCTTCTCCTGTTTGATCTTTTCAT
genomic: TGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAgtacgccatt ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT
EST: gi|86596721|gb|CI286634.1|CI286634
EST:     TGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATA                         AACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT
genomic: TGATATTGCACAAAAGCGTGAACAAAACGAATCATCATGAAGAAGATATAgtacgccatt ... ttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttctgtttcatgggtagtatttttttagtgatcacgcattgttttttgtgcagAACCAAGTATGGATTTGCGTTCTCCTGTTTGATCTTTTCAT
                                        ttgtttttt  CT-rich tract
                tagtatttttttagt  TA-rich tract