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...catatttattactaagtaactgctttgtaaaggaaagaatcttagattccttgaagcatatataattataacaggaataaacatttttgctctaatatagGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAGAACACAG
species | Oryza sativa |
transcript | LOC_Os01g33420.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAG GTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAEST: gi|58655012|gb|CK043692.1|CK043692
genomic: ATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGgtaattattt ... tctaatatagGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGA
EST: ATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAG GTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGA
genomic: ATCTTGGCCAGATTTAGACATGCTCCCATTTGGCTGGCTTACAAATGCAGgtaattattt ... tctaatatagGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGA
attccttgaagcatatataattataacaggaataaacatttttgctctaatatagGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAGAACACAG
tttttgctct CT-rich tract
atatataattataaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catatttattactaagtaactgctttgtaaaggaaagaatcttagattccttgaagcatatataattataacaggaataaacatttttgctctaatatagGTGTCAATCAGGGTCCACATAGGCAATGTGAACTTACATCTGATGAACAGAGAACACAG
- - - - - - - - - -ctgcttt
- - - - - - - - - - - - - - - - gaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttttgc