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...tgttcttagtatcagggattgaaatgtcaggttagcaaccagaaaaatttcaggggaacaactacatgaaagtatttgacttttgctccttttacttcagGAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTCTGATGATGCTCAAGTTTCGAGGGAAGAGAGGTCATTCCGGTTATGGATT
species | Oryza sativa |
transcript | LOC_Os01g33080.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTTTACCAAATCTAAATCTTGCTTTTGTGGCTCATATTTTCCAGAAAAG GAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTCEST: gi|58660481|gb|CK049161.1|CK049161
genomic: GGTTTACCAAATCTAAATCTTGCTTTTGTGGCTCATATTTTCCAGAAAAGgtatagatag ... tttacttcagGAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTC
EST: GGTTTACCAAATCTAAATCTTGCTTTTGTGGCTCATATTTTCCAGAAAAG GAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTCEST: gi|25801129|gb|CA757090.1|CA757090
genomic: GGTTTACCAAATCTAAATCTTGCTTTTGTGGCTCATATTTTCCAGAAAAGgtatagatag ... tttacttcagGAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTC
EST: GGTTTACCAAATCTAAATCTTGCTTTTGTGGCTCATATTTTCCAGAAAAG GAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTC
genomic: GGTTTACCAAATCTAAATCTTGCTTTTGTGGCTCATATTTTCCAGAAAAGgtatagatag ... tttacttcagGAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTC
aatttcaggggaacaactacatgaaagtatttgacttttgctccttttacttcagGAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTCTGATGATGCTCAAGTTTCGAGGGAAGAGAGGTCATTCCGGTTATGGATT
atttgac putative branch site (score: 3)
cttttgctccttttac CT-rich tract
aaagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcttagtatcagggattgaaatgtcaggttagcaaccagaaaaatttcaggggaacaactacatgaaagtatttgacttttgctccttttacttcagGAATGGGCTGTCAAAACAAATGAAACAAGTTTCCTTTGTCGACGGACTCTCTGATGATGCTCAAGTTTCGAGGGAAGAGAGGTCATTCCGGTTATGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
tgttctt
- - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacatg