1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttcgttcactatctttctttgcagagatcttatgctttctgtccataagacgtgcactttagaatatattttctgatttcatatgctttttactacgcagGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGTGCCATCTGCCAGGTGGACCTTGAACCAAGTGAAGGTATATCAGTCCAT
species | Oryza sativa |
transcript | LOC_Os01g32964.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTATGGTGGAAGAGTTATTCGAAGAAGGTTCAGCAATGCTATCAGAGAG GTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGEST: gi|88983142|gb|CI020706.1|CI020706
genomic: GGTATGGTGGAAGAGTTATTCGAAGAAGGTTCAGCAATGCTATCAGAGAGgtcagttgta ... tactacgcagGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATG
EST: TGCTATCAGAGAG GTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGEST: gi|86847253|gb|CI285280.1|CI285280
genomic: TGCTATCAGAGAGgtcagttgta ... tactacgcagGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATG
EST: TGCTATCAGAGAG GTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGEST: gi|86257633|gb|CI063986.1|CI063986
genomic: TGCTATCAGAGAGgtcagttgta ... tactacgcagGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATG
EST: TCAGCAATGCTATCAGAGAG GTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGEST: gi|88340301|gb|CI652650.1|CI652650
genomic: TCAGCAATGCTATCAGAGAGgtcagttgta ... tactacgcagGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATG
EST: AAGGTTCAGCAATGCTATCAGAGAG GTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGEST: gi|44671989|gb|CR285423.1|CR285423
genomic: AAGGTTCAGCAATGCTATCAGAGAGgtcagttgta ... tactacgcagGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATG
EST: GGTATGGTGGAAGAGTTATTCGAAGAAGGTTCAGCAATGCTATCAGAGAG GTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTATACATG
genomic: GGTATGGTGGAAGAGTTATTCGAAGAAGGTTCAGCAATGCTATCAGAGAGgtcagttgta ... tactacgcagGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATG
taagacgtgcactttagaatatattttctgatttcatatgctttttactacgcagGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGTGCCATCTGCCAGGTGGACCTTGAACCAAGTGAAGGTATATCAGTCCAT
ttctgat putative branch site (score: 3)
ctttttact putative PPT
tttagaatatattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcgttcactatctttctttgcagagatcttatgctttctgtccataagacgtgcactttagaatatattttctgatttcatatgctttttactacgcagGTTAGGCAATGACTCAAGTGGTCGGAGAACATCATCAAGCTTGTTTACATGTGCCATCTGCCAGGTGGACCTTGAACCAAGTGAAGGTATATCAGTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - ctttgca
- - - - - - - - - - - - - - - - tgctttc
- - - - - - - - - - - - - - - - - - - - - - - - - cgtgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatgc