1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccaagatcttgtctacatgcctgacccaaagtccaaaatataaaataggctaaagttattcgacagaaatactatttttacttgtagtttgtttttgcagCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTCAGAAGCCCGATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTT
species | Oryza sativa |
transcript | LOC_Os01g28680.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAAACTATTAAACTATGGGACATCAGGAAAATGTCGTCCACTGTGAAAGA CTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTCEST: gi|29664057|gb|CB660332.1|CB660332
genomic: CAAACTATTAAACTATGGGACATCAGGAAAATGTCGTCCACTGTGAAAGAgtaaatacag ... gtttttgcagCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTC
EST: CAAACTATTAAACTATGGGACATCAGGAAAATGTCGTCCACTGTGAAAGA CTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTCEST: gi|87010952|gb|CI286027.1|CI286027
genomic: CAAACTATTAAACTATGGGACATCAGGAAAATGTCGTCCACTGTGAAAGAgtaaatacag ... gtttttgcagCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTC
EST: CAAACTATTAAACTATGGGACATCAGGAAAATGTCGTCCACTGTGAAAGA CTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTCEST: gi|29688485|gb|CB684760.1|CB684760
genomic: CAAACTATTAAACTATGGGACATCAGGAAAATGTCGTCCACTGTGAAAGAgtaaatacag ... gtttttgcagCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTC
EST: CAAACTATTAAACTATGGGACATCAGGAAAATGTCGTCCACTGTGAAAGA CTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTC
genomic: CAAACTATTAAACTATGGGACATCAGGAAAATGTCGTCCACTGTGAAAGAgtaaatacag ... gtttttgcagCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTC
taggctaaagttattcgacagaaatactatttttacttgtagtttgtttttgcagCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTCAGAAGCCCGATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTT
ggctaaa putative branch site (score: 64)
tttgttttt putative PPT
aaatactatttttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaagatcttgtctacatgcctgacccaaagtccaaaatataaaataggctaaagttattcgacagaaatactatttttacttgtagtttgtttttgcagCTGCACACCAAAAGCATATGAATGGGATTACAGATGGATGACATATCCCTCAGAAGCCCGATATTTCAAGCATCCATATGACCAGTCCCTGTCAACATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC