1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcagtgctaggctacttgttttgactaattatttgtttcctacgtccacttagctgtgtatcatgactgcactaatagctgaacgggtctgtcaactgaaacaaaatttacttcaacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTG
species | Oryza sativa |
transcript | LOC_Os01g26920.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGACACAGGGGTCGAATCTTTTTGGGCTGTGACCATAAGCCTCTTTCCAG GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTEST: gi|88225514|gb|CI225430.1|CI225430
genomic: GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
EST: GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAG GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTEST: gi|86869498|gb|CI346358.1|CI346358
genomic: GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
EST: CCTCTTTCCAG GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTEST: gi|86889862|gb|CI333513.1|CI333513
genomic: CCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
EST: GCCTCTTTCCAG GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTEST: gi|88539969|gb|CI469969.1|CI469969
genomic: GCCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
EST: GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAG GCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
genomic: GGACACAGGGGTCGAATCTTTTTGGGCTGTGACAATAAGCCTCTTTCCAGgtcagtgcta ... aacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTT
cactaatagctgaacgggtctgtcaactgaaacaaaatttacttcaacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTG
cactaat putative branch site (score: 13)
cttttc putative PPT
aaacaaaatttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgctaggctacttgttttgactaattatttgtttcctacgtccacttagctgtgtatcatgactgcactaatagctgaacgggtctgtcaactgaaacaaaatttacttcaacttttcagGCAAGAAATAATGGACTCTGTTAACAGAAGTGGAAAATTTGACACGAAGTTCCAAGGTTTTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA