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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttcttcagtatctcgttgcaatcattatctagctcatgggtgctattttattacatgactcaatttcatttgaaaaggtgggattttgtgtttgcagGTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAAT

Basic information

species Oryza sativa
transcript LOC_Os01g23610.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g23610.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G145595_T02 (Zea mays), 3'ss of exon 6
catttcttcagtatctcgttgcaatcattatctagct--catgggtgctattttattacatgactcaatttcatttgaaaaggtgggattttgtgtttgcagGTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAAT
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-cttaattaaaattgtaatcatttttattaaacaaacagtatttctgctgatttcataaacattatacttttcattatgaaacttggattt-gcatgcctagGTGGATGCAGCACTCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAAT

upper sequence: LOC_Os01g23610.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 7
catttcttcagtatctcgttgcaatcattatctagctcatgggtgctattttattacatgactcaatttcatttgaaaaggtgggattttgtgt-ttgcagGTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAAT
| | | | || | | || | | || | | ||| | ||| || ||| ||| | | ||| | | | |||||||||| || || ||||| ||||||||||| |||||||| |||| ||||| ||||| |||
-actaggatgtaaccagcttaagtttgatctcccttttcttttacctgtatagttaattacttcagatttattacaaattgctgtctttgctttgctaaagGTGGATGCTGCACTAATAGCAACCGGAAGGGCTCCGTTCACACAAGGTCTTGGATTGGAGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattttattacatgactcaatttcatttgaaaaggtgggattttgtgtttgcagGTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAAT
                   aatttcatttgaaaa  TA-rich tract