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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttcttcagtatctcgttgcaatcattatctagctcatgggtgctattttattacatgactcaatttcatttgaaaaggtgggattttgtgtttgcagGTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAAT

Basic information

species Oryza sativa
transcript LOC_Os01g23610.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g23610.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G145595_T02 (Zea mays), 3'ss of exon 6
catttcttcagtatctcgttgcaatcattatctagct--catgggtgctattttattacatgactcaatttcatttgaaaaggtgggattttgtgtttgcagGTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAAT
  ||  || |   | |  |     | ||||   |      ||   ||||  |||  || |      | |||   ||   ||  | |||||| |  |    ||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||
-cttaattaaaattgtaatcatttttattaaacaaacagtatttctgctgatttcataaacattatacttttcattatgaaacttggattt-gcatgcctagGTGGATGCAGCACTCATAGCTACTGGAAGGGCACCCTTCACCAAAGGACTTGGCTTGGAAAAT

upper sequence: LOC_Os01g23610.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GLYMA07G37050.2 (Glycine max), 3'ss of exon 7
catttcttcagtatctcgttgcaatcattatctagctcatgggtgctattttattacatgactcaatttcatttgaaaaggtgggattttgtgt-ttgcagGTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAAT
 | |        | |   ||    |   | ||    |  |     || | |  |||  |   |||  || |||  |||  |  |  |||  | |  |  |||||||||| || || ||||| ||||||||||| ||||||||  |||| ||||| ||||| |||
-actaggatgtaaccagcttaagtttgatctcccttttcttttacctgtatagttaattacttcagatttattacaaattgctgtctttgctttgctaaagGTGGATGCTGCACTAATAGCAACCGGAAGGGCTCCGTTCACACAAGGTCTTGGATTGGAGAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctattttattacatgactcaatttcatttgaaaaggtgggattttgtgtttgcagGTGGATGCAGCTCTCATAGCTACCGGAAGGGCACCGTTCACCAAAGGGCTTGGCTTGGAAAAT
                   aatttcatttgaaaa  TA-rich tract