1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtgcctgccttctttctactctgcgtgttttaattctaaatagttgtgaaagagatgtccttccgattcaacttccccaacccctttctctgacaaaagatgatttcatttcttcctatgtagGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTGTCGTGGAGATATCAAGAATGAACAAAGTTGGTCGCCCTGTGCTTGTTG
species | Oryza sativa |
transcript | LOC_Os01g21820.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAG GATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTEST: gi|29676133|gb|CB672408.1|CB672408
genomic: ACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAGgtgcctgcct ... tcctatgtagGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCT
EST: ACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAG GATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTEST: gi|29676703|gb|CB672978.1|CB672978
genomic: ACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAGgtgcctgcct ... tcctatgtagGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCT
EST: ACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAG GATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCT
genomic: ACAAACTAAAAGTTACCGTTGTTCCAACAAACAAGCCAATGATACGAAAGgtgcctgcct ... tcctatgtagGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCT
caacttccccaacccctttctctgacaaaagatgatttcatttcttcctatgtagGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTGTCGTGGAGATATCAAGAATGAACAAAGTTGGTCGCCCTGTGCTTGTTG
ctctgac putative branch site (score: 19)
tttcatttcttcctat putative PPT
atttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcctgccttctttctactctgcgtgttttaattctaaatagttgtgaaagagatgtccttccgattcaacttccccaacccctttctctgacaaaagatgatttcatttcttcctatgtagGATGAATCGGATGTTGTTTTTAGAGCAACAAATGGAAAATGGCGTGCTGCTGTCGTGGAGATATCAAGAATGAACAAAGTTGGTCGCCCTGTGCTTGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT