1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaatggcagtttggcttcttgtcattttcctttattctgtcatagaacagccatatattatgtacctctttttagaacaactgtgatttgtatctgaatggccattttgagatctatctcagtatttccagcataacatgttgcatttcttattctcagGGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATCGGTCCTCGATACGCT
species | Oryza sativa |
transcript | LOC_Os01g17240.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAG GGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATCEST: gi|33679924|gb|CF308163.1|CF308163
genomic: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAGgtaaatggca ... ttattctcagGGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATC
EST: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAG GGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATGTCEST: gi|66923063|gb|CX109911.1|CX109911
genomic: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAGgtaaatggca ... ttattctcagGGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATC
EST: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAG GGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATCEST: gi|24468687|gb|CA305636.1|CA305636
genomic: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAGgtaaatggca ... ttattctcagGGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATC
EST: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAG GGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATCEST: gi|29678015|gb|CB674290.1|CB674290
genomic: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAGgtaaatggca ... ttattctcagGGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATC
EST: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAG GGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATCEST: gi|218504692|gb|FG962736.1|FG962736
genomic: GCCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCCAGgtaaatggca ... ttattctcagGGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATC
EST: CCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGCTCAG GGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATAT
genomic: CCATATCGATTCACCAGCAATGGCAGTGTTGTGCATGGCTTGTAGC-CAGgtaaatggca ... ttattctcagGGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATAT
ttttgagatctatctcagtatttccagcataacatgttgcatttcttattctcagGGAACTGATGCATTCTCACAGTCCGGTCTATACTCAAATCACCAAGATATCGGTCCTCGATACGCT
gcataac putative branch site (score: 27)
catttcttattctc putative PPT
atttcttatt TA-rich tract