1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...acctccgagtgcagtggccaggatatttattccattttgttctactggaaaatgctgcaagctttcttaccaacgattactgcatttgcctttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCATACGCGAAAGGTGCATCGGGCAATGTGGCGACGGAGGACGTGGTGTACA
species | Oryza sativa |
transcript | LOC_Os01g16350.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAG ATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCAEST: gi|88248631|gb|CI248480.1|CI248480
genomic: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAGgtaatcatcc ... tttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCA
EST: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAG ATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCAEST: gi|88239536|gb|CI240013.1|CI240013
genomic: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAGgtaatcatcc ... tttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCA
EST: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAG ATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCAEST: gi|86488657|gb|CI131290.1|CI131290
genomic: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAGgtaatcatcc ... tttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCA
EST: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAG ATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCAEST: gi|86528243|gb|CI168449.1|CI168449
genomic: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAGgtaatcatcc ... tttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCA
EST: TCCACGATACCTTCGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAG ATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCAEST: gi|88216675|gb|CI214775.1|CI214775
genomic: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAGgtaatcatcc ... tttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCA
EST: TCCACGATACTTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAG ATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCAEST: gi|88848527|gb|CI087049.1|CI087049
genomic: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAGgtaatcatcc ... tttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCA
EST: CAATCGCTTTCAAATATCCTCATCTCTCTCCAG ATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCAEST: gi|58587638|gb|CF985946.1|CF985946
genomic: CAATCGCTTTCAAATATCCTCATCTCTCTCCAGgtaatcatcc ... tttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCA
EST: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAG ATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCA
genomic: TCCACGATACCTACGGCCAATCGCTTTCAAATATCCTCATCTCTCTCCAGgtaatcatcc ... tttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCA
tggaaaatgctgcaagctttcttaccaacgattactgcatttgcctttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCATACGCGAAAGGTGCATCGGGCAATGTGGCGACGGAGGACGTGGTGTACA
ttcttac putative branch site (score: 7)
tttgccttt putative PPT
tttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acctccgagtgcagtggccaggatatttattccattttgttctactggaaaatgctgcaagctttcttaccaacgattactgcatttgcctttgaatcagATGGGTGTGAGCGTTGTGGACTCTTCCGTAGCGGGCCTCGGAGGGTGCCCATACGCGAAAGGTGCATCGGGCAATGTGGCGACGGAGGACGTGGTGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - -ctactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - tgctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgca