1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tggtgttgccgtgctgatactctggtttattgttttttgtgtaaatgattcattgacagttgttttatacaattattgatacacgtgcgtggtatttcagGTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGAGTTTCTCATGTAGCAGTTGTTTCCAATGAA
species | Oryza sativa |
transcript | LOC_Os01g15490.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCGATCATTGTAGTTGGTGATGAAATATT G-TCGGCACAGTTGAGGATAAGCTA-GTGCAGGCTTGTGCAAGAAGCTTCAEST: gi|25798023|gb|CA753984.1|CA753984
genomic: TCGATCATTGTAGTTGGTGATGAAATATTgtgagtaatc ... ggtatttcagGTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCA
EST: CAGACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGATGAAATATT GTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCAEST: gi|58690912|gb|CK079599.1|CK079599
genomic: CAGACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGATGAAATATTgtgagtaatc ... ggtatttcagGTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCA
EST: CAGACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGACGAAATATT GTTCGGCACAGTTGAGGATAAGEST: gi|58691625|gb|CK080312.1|CK080312
genomic: CAGACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGATGAAATATTgtgagtaatc ... ggtatttcagGTTCGGCACAGTTGAGGATAAG
EST: CAGACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGACGAAATATT GTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCAEST: gi|58605964|gb|CK033997.1|CK033997
genomic: CAGACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGATGAAATATTgtgagtaatc ... ggtatttcagGTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCA
EST: GACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGACGAAATATT GTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCAEST: gi|29670775|gb|CB667050.1|CB667050
genomic: GACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGATGAAATATTgtgagtaatc ... ggtatttcagGTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCA
EST: CAGACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGATGAAATATT GTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCA
genomic: CAGACGATCTCACGCTCAGCGTCGATCATTGTAGTTGGTGATGAAATATTgtgagtaatc ... ggtatttcagGTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCA
tgattcattgacagttgttttatacaattattgatacacgtgcgtggtatttcagGTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGAGTTTCTCATGTAGCAGTTGTTTCCAATGAA
tattgat putative branch site (score: 11)
ttgttttatacaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtgttgccgtgctgatactctggtttattgttttttgtgtaaatgattcattgacagttgttttatacaattattgatacacgtgcgtggtatttcagGTTCGGCACAGTTGAGGATAAGCTAGGTGCAGGCTTGTGCAAGAAGCTTCATGCAATTGGCTGGCGAGTTTCTCATGTAGCAGTTGTTTCCAATGAA
- -tgttgcc
- - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - -tgattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgtgc