1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tatgaaatatctactgtagatcacagcatgaaagttaattgcttttttgacatccatattgccatctcatcatctccccccaccccctttttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAAATCTCAAGAAAAGCATCAAGAAAGAGGCTTGCTGGACTATTTCAAATA
species | Oryza sativa |
transcript | LOC_Os01g14950.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAG TGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAEST: gi|55411455|gb|CV723831.1|CV723831
genomic: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt ... ttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
EST: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAG TGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAEST: gi|2443054|gb|C74825.1|C74825
genomic: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt ... ttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
EST: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAG TGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAEST: gi|29640361|gb|CB645370.1|CB645370
genomic: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt ... ttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
EST: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAG TGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAEST: gi|29643710|gb|CB648717.1|CB648717
genomic: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt ... ttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
EST: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAG TGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAEST: gi|66912883|gb|CX099731.1|CX099731
genomic: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt ... ttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
EST: CACTACGAACTGGTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAG TGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAEST: gi|218479493|gb|FG944059.1|FG944059
genomic: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt ... ttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
EST: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAG TGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAEST: gi|58684581|gb|CK073268.1|CK073268
genomic: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt ... ttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
EST: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAG TGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAEST: gi|13806131|gb|AU181373.1|AU181373
genomic: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt ... ttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
EST: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAG TGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
genomic: CACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt ... ttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAA
tttgacatccatattgccatctcatcatctccccccaccccctttttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAAATCTCAAGAAAAGCATCAAGAAAGAGGCTTGCTGGACTATTTCAAATA
ttttgac putative branch site (score: 152)
ttgccatctcatcatc putative PPT
tttttttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgaaatatctactgtagatcacagcatgaaagttaattgcttttttgacatccatattgccatctcatcatctccccccaccccctttttttgtacagTGCATCATTGATCATCAAGCCCTCCCTTGCCTCCTAAGTCTGTTGACACAAAATCTCAAGAAAAGCATCAAGAAAGAGGCTTGCTGGACTATTTCAAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - -tctactg
- - - - - - - - - - - - -gcatgaa
- - - - - - - - - - - - - - - - - - - -tgctttt
- - - - - - - - - - - - - - - - - - - - - - - - - catccat