1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagcggctggattttctttgcacattttggggaagtttgttgtttaccaccctggactctattgtcgaagtcggtatgccttacaattgttttctgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
species | Oryza sativa |
transcript | LOC_Os01g14860.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58686155|gb|CK074842.1|CK074842
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58606572|gb|CK034605.1|CK034605
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58687307|gb|CK075994.1|CK075994
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58679602|gb|CK068289.1|CK068289
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58590369|gb|CF988677.1|CF988677
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TGGGCATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58673993|gb|CK062679.1|CK062679
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG GCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCEST: gi|218498670|gb|FG952679.1|FG952679
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATC
EST: TGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58602991|gb|CK013519.1|CK013519
genomic: TGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGAGATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58672614|gb|CK061300.1|CK061300
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|218486932|gb|FG950343.1|FG950343
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGTTGAAAGTGGTGTAGACCAACTTGTGGAEST: gi|38469291|gb|CF953422.1|CF953422
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGA
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|29677190|gb|CB673465.1|CB673465
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58679239|gb|CK067926.1|CK067926
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|29677191|gb|CB673466.1|CB673466
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: GCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|58682391|gb|CK071078.1|CK071078
genomic: GCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|66918477|gb|CX105325.1|CX105325
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAGEST: gi|2317500|gb|C22554.1|C22554
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
EST: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAG CCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
genomic: TTGACATCTGGTCTGCTGGATGTGTTCTTGCTGAACTTATGTTAGGGCAGgtaagcggct ... tgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
ccctggactctattgtcgaagtcggtatgccttacaattgttttctgttcgacagCCTCTGTTTCCTGGTGAAAGTGGTGTAGACCAACTTGTGGAAATCATCAAG
gccttac putative branch site (score: 3)
ttttctgttc putative PPT
aattgtttt TA-rich tract