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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattagccttgctacctcttttaccgttgtgcacgtttgttgttgtaaaattttaaggcttttcttttttagGCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG

Basic information

species Oryza sativa
transcript LOC_Os01g14810.3
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g14810.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G044819_T02 (Zea mays), 3'ss of exon 6
----------------------gtaattagccttgctacctcttttaccgttgtgcacgtttgtt--gttgtaaa---attttaaggcttttcttttttagGCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG
                       |  || | |||| |    |||||  | |||| ||| | || |  ||  ||||   | |||        | ||||| ||||||||||||  |||||||||||||| ||||||||||| ||||| |||
aggtccgcccaccaagccgtgtctcttttgacttg-tggaacttttgtccttgtccacttctgctatgtaataaacgaagtttggtatacctttttttcagGCTGTTTCCAAAGCACTTTTTCGAGCACATGTAGAAGGCCAACTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627736|gb|CB632747.1|CB632747
EST:     GGTTGGTGCCAGCTGAACTTGGGCCACTGGATTACAAAGGACTGTACAAT                         GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG
genomic: GGTTGGTGCCAGCTGAACTTGGGCCACTGGATTACAAAGGACTGTACAATgtaattagcc ... tcttttttagGCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG
EST: gi|66923280|gb|CX110128.1|CX110128
EST:     GGTTGGTGCCAGCTGAACTTGGGCCACTGGATTACAAAGGACTGTACAAT                         GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG
genomic: GGTTGGTGCCAGCTGAACTTGGGCCACTGGATTACAAAGGACTGTACAATgtaattagcc ... tcttttttagGCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG
EST: gi|29673384|gb|CB669659.1|CB669659
EST:     GGTTGGTGCCAGCTGAACTTGGGCCACTGGATTACAAAGGACTGTACAAT                         GCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG
genomic: GGTTGGTGCCAGCTGAACTTGGGCCACTGGATTACAAAGGACTGTACAATgtaattagcc ... tcttttttagGCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttttaccgttgtgcacgtttgttgttgtaaaattttaaggcttttcttttttagGCTGTTTCCAGGGCACTTTTTCGAGCGCATGTAGAAGGTCAACTCAAG
                                         cttttctttttt  CT-rich tract
                  tttgttgttgtaaaat  TA-rich tract