1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atatcaatgcaaatgtgcaattactcaatatgttttttgattgggaattactcaatagattcactcagccatcatgtatgtattccacctttgattgcagGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG
species | Oryza sativa |
transcript | LOC_Os01g12670.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAG GTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGEST: gi|29678140|gb|CB674415.1|CB674415
genomic: TCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGgtaacttatg ... ttgattgcagGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG
EST: TCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAG GTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAGEST: gi|33793232|gb|CF322496.1|CF322496
genomic: TCTACCATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGgtaacttatg ... ttgattgcagGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG
EST: ATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAG GTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG
genomic: ATTATTATCATGGAAGCAGCTACGACATGGGAACACTCATTGAGgtaacttatg ... ttgattgcagGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG
aattactcaatagattcactcagccatcatgtatgtattccacctttgattgcagGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG
ctttgat putative branch site (score: 5)
ttccaccttt CT-rich tract
aatagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatcaatgcaaatgtgcaattactcaatatgttttttgattgggaattactcaatagattcactcagccatcatgtatgtattccacctttgattgcagGTCCGCAGGATGTGGGATTCCTTTATTAGAGCTGGAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA