1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaatatgtgccatacgaatgactttttggtgttgttatatgtgtctctgaggcattacagcgttgtgtgccattctaatcattttgttattcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTCCGACATTTTACTTGATTCCCCAGACCAGAATGACATAG
species | Oryza sativa |
transcript | LOC_Os01g12080.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTEST: gi|4880376|gb|AU064675.1|AU064675
genomic: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACT
EST: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTEST: gi|29616787|gb|CB621799.1|CB621799
genomic: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACT
EST: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTEST: gi|29613834|gb|CB618847.1|CB618847
genomic: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACT
EST: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTEST: gi|29683452|gb|CB679727.1|CB679727
genomic: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACT
EST: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTEST: gi|7332593|gb|AU085939.1|AU085939
genomic: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACT
EST: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTEST: gi|29684396|gb|CB680671.1|CB680671
genomic: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACT
EST: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTEST: gi|58605925|gb|CK033958.1|CK033958
genomic: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACT
EST: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCGTTTCCTGGCCTCAGACTEST: gi|29683451|gb|CB679726.1|CB679726
genomic: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACT
EST: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTEST: gi|38480244|gb|CF964333.1|CF964333
genomic: CTGGAATTTCAGCCTTTCTGACCTAACAGCAGATTTAACAAGTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACT
EST: AGCAGATTTAACAATGTTTGGGAG ACTTGGAAGCACTTGAGAACTACGCAGGTACTCCGTTCCTGGCCTCAGAC
genomic: AGCAGATTTAACAA-GTTTGGGAGgtagttttat ... tcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGAC
tctgaggcattacagcgttgtgtgccattctaatcattttgttattcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTCCGACATTTTACTTGATTCCCCAGACCAGAATGACATAG
ttctaat putative branch site (score: 32)
taatcattttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaatatgtgccatacgaatgactttttggtgttgttatatgtgtctctgaggcattacagcgttgtgtgccattctaatcattttgttattcatgttcagACTTGGAAGCACTTGAGAACTACGCAGGTACTCCTTTCCTGGCCTCAGACTCCGACATTTTACTTGATTCCCCAGACCAGAATGACATAG
- -tatgtgc
- - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccattc