1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
...gttcatgagatcattatatgcactctagtttgtctatcaagtttgcgtgagcagcgggtctgatatttggattttttatttcatcttctattgcatacagGCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACCTGCTATTCTTTCTGTGGAA
species | Oryza sativa |
transcript | LOC_Os01g11370.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAG GCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACCEST: gi|29658869|gb|CB655144.1|CB655144
genomic: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAGgtcatttcct ... ttgcatacagGCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACC
EST: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAG GCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACCEST: gi|58674693|gb|CK063380.1|CK063380
genomic: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAGgtcatttcct ... ttgcatacagGCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACC
EST: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAG GCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACCEST: gi|29626953|gb|CB631964.1|CB631964
genomic: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAGgtcatttcct ... ttgcatacagGCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACC
EST: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAG GCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACCEST: gi|29624813|gb|CB629824.1|CB629824
genomic: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAGgtcatttcct ... ttgcatacagGCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACC
EST: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAG GCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACC
genomic: TCCTCTGCAACAATTGAAGCAAGATCCATGTCAACTTTTTTCAACATTAGgtcatttcct ... ttgcatacagGCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACC
cgtgagcagcgggtctgatatttggattttttatttcatcttctattgcatacagGCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACCTGCTATTCTTTCTGTGGAA
gtctgat putative branch site (score: 13)
ttttttatttcatctt putative PPT
atatttggatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcatgagatcattatatgcactctagtttgtctatcaagtttgcgtgagcagcgggtctgatatttggattttttatttcatcttctattgcatacagGCGAAAGAATTCTATGCTTGAGTCTGCTGATCATTTGCCCAACCCAGAACCTGCTATTCTTTCTGTGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
gttcatg
- - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - gagcagc