1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ctctttttttccctagtagctgtactgtcatattttatatagtgaattagctgatctggcacaaacctaatatgttgtataaaatatgttctctttgcagGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCAT
species | Oryza sativa |
transcript | LOC_Os01g11120.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTAGATGTAAAGAATCTCTTTGAAGAACTTTGTGGTGAG GTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTEST: gi|29678319|gb|CB674594.1|CB674594
genomic: ATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGgtgagctttg ... ctctttgcagGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCT
EST: GTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAG GTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTEST: gi|58685262|gb|CK073949.1|CK073949
genomic: GTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGgtgagctttg ... ctctttgcagGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCT
EST: GTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAG GTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTEST: gi|89167533|gb|CI108934.1|CI108934
genomic: GTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGgtgagctttg ... ctctttgcagGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCT
EST: GATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAG NTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTEST: gi|88851137|gb|CI373895.1|CI373895
genomic: GATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGgtgagctttg ... ctctttgcagGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCT
EST: ACTTTGTGGTGAG GTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTEST: gi|58682423|gb|CK071110.1|CK071110
genomic: ACTTTGTGGTGAGgtgagctttg ... ctctttgcagGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCT
EST: GTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAG GTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCT
genomic: GTTACTCAATTAGATGTAAAGAATTTCTTTGAAGAACTTTGTGGTGAGgtgagctttg ... ctctttgcagGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCT
attagctgatctggcacaaacctaatatgttgtataaaatatgttctctttgcagGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCAT
acctaat putative branch site (score: 16)
tgttctcttt putative PPT
taatatgttgtataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctctttttttccctagtagctgtactgtcatattttatatagtgaattagctgatctggcacaaacctaatatgttgtataaaatatgttctctttgcagGTCTCTCGTTTGAGACTTCTAGGGGATAATGTACATTCTACAAGGATTGCTTTTGTTGAGTTTGTCCAT
- - - - - - - - - - tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt