1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtggtgtcacaagcaggtttcatatatttgatgagacaagtactttatgaatgttctctgtaacatgacattccttttctcttttgtttttgataataagGTATATCATCGCTCCCATGTTTCGCGGAGAGAGACGTGCCTCCAGCAATCAAGCAACTCTGGCAACACCGCTATAACGAGTACTTGGCTGATAGTTCACT
species | Oryza sativa |
transcript | LOC_Os01g10140.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TAAAGCAGGTGATCCAAAACCGCTGCGATCTGATAATGTTCAACCAACCA GTATATCATCGCTCCCATGTTTCGCGGAGAGAGACGTGCCTCCAGCAATCAEST: gi|2311470|gb|C27625.1|C27625
genomic: TAAAGCAGGTGATCCAAAACCGCTGCGATCTGATAATGTTCAACCAACCAgtaagttgtc ... tgataataagGTATATCATCGCTCCCATGTTTCGCGGAGAGAGACGTGCCTCCAGCAATCA
EST: TAAAGCAGGTGATCCAAAACCGCTGCGATCTGATAATGTTCAACCAACCA GTATATCATCGCTCCCATGTTTCGCGGAGAGAGACGTGCCTCCAGCAATCA
genomic: TAAAGCAGGTGATCCAAAACCGCTGCGATCTGATAATGTTCAACCAACCAgtaagttgtc ... tgataataagGTATATCATCGCTCCCATGTTTCGCGGAGAGAGACGTGCCTCCAGCAATCA
tatgaatgttctctgtaacatgacattccttttctcttttgtttttgataataagGTATATCATCGCTCCCATGTTTCGCGGAGAGAGACGTGCCTCCAGCAATCAAGCAACTCTGGCAACACCGCTATAACGAGTACTTGGCTGATAGTTCACT
cattccttttctcttt CT-rich tract
ttttgtttttgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtggtgtcacaagcaggtttcatatatttgatgagacaagtactttatgaatgttctctgtaacatgacattccttttctcttttgtttttgataataagGTATATCATCGCTCCCATGTTTCGCGGAGAGAGACGTGCCTCCAGCAATCAAGCAACTCTGGCAACACCGCTATAACGAGTACTTGGCTGATAGTTCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT