1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tacatgtttgttttctgtacggttttattcttctctattcaatgaaattggcggctcgccgttttcgttttaacctaacgaacccttgaacctgctgcagATGCTCTACGATGCATCTGAATTCGAGCAGACACAGAGGGACCCCGACGACGTGTTCTCGGAAGCCTGCGTGATCTACCAGATTGTGTATGAGAAAGCAC
species | Oryza sativa |
transcript | LOC_Os01g10130.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAGAAGAAAGGAACATGAAGTTCCAAGAACTCTACGAGAAGTACAAGCAT ATGCTCTACGATGCATCTGAATTCGAGCAGACACAGAGGGACCCCGACGACEST: gi|29658256|gb|CB654531.1|CB654531
genomic: AAGAAGAAAGGAACATGAAGTTCCAAGAACTCTACGAGAAGTACAAGCATgtgagtatcc ... cctgctgcagATGCTCTACGATGCATCTGAATTCGAGCAGACACAGAGGGACCCCGACGAC
EST: AAGAAGAAAGGAACATGAAGTTCCAAGAACTCTACGAGAAGTACAAGCAT ATGCTCTACGATGCATCTGAATTCGAGCAGACACAGAGGGACCCCGACGAC
genomic: AAGAAGAAAGGAACATGAAGTTCCAAGAACTCTACGAGAAGTACAAGCATgtgagtatcc ... cctgctgcagATGCTCTACGATGCATCTGAATTCGAGCAGACACAGAGGGACCCCGACGAC
aattggcggctcgccgttttcgttttaacctaacgaacccttgaacctgctgcagATGCTCTACGATGCATCTGAATTCGAGCAGACACAGAGGGACCCCGACGACGTGTTCTCGGAAGCCTGCGTGATCTACCAGATTGTGTATGAGAAAGCAC
acctaac putative branch site (score: 1)
ttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacatgtttgttttctgtacggttttattcttctctattcaatgaaattggcggctcgccgttttcgttttaacctaacgaacccttgaacctgctgcagATGCTCTACGATGCATCTGAATTCGAGCAGACACAGAGGGACCCCGACGACGTGTTCTCGGAAGCCTGCGTGATCTACCAGATTGTGTATGAGAAAGCAC
- - tgtttgt
- - - - - - - ctgtacg
- - - - - - - - - - - - - - - - - - - -caatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - -ggcggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacgaac