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gttggttctactttctcaattgatacttcagcacttcttgtctagagttgcattttttcctttttagtagcacatgctcttgcatttatttcttgcatcatttcagCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAAT
species | Oryza sativa |
transcript | LOC_Os01g08200.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACG CTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGAEST: gi|29622184|gb|CB627195.1|CB627195
genomic: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGgttggttcta ... atcatttcagCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGA
EST: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACG CTACTTTGAGAAGCATAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGAEST: gi|58693785|gb|CK082472.1|CK082472
genomic: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGgttggttcta ... atcatttcagCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGA
EST: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACG CTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGAEST: gi|33674839|gb|CF303078.1|CF303078
genomic: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGgttggttcta ... atcatttcagCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGA
EST: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACG CTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGAEST: gi|58661919|gb|CK050599.1|CK050599
genomic: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGgttggttcta ... atcatttcagCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGA
EST: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACG CTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGA
genomic: ATGGCCTCAGTAATGCAAGTTATGTTTTCAACTCATCCTTTTATATCACGgttggttcta ... atcatttcagCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGA
attttttcctttttagtagcacatgctcttgcatttatttcttgcatcatttcagCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAAT
tcatttc CT-rich tract
atttatttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggttctactttctcaattgatacttcagcacttcttgtctagagttgcattttttcctttttagtagcacatgctcttgcatttatttcttgcatcatttcagCTACTTTGAGAAGCAGAGCTTGAAAGCTGCATTTGCAATTGCCCCAGCTGATCCAACATTGGACTTGAACATGCAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT