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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcagttgagttcacttcagttctttttcaccctcactataagttctaaagagcaggtatttctgttaatgttttgatgtgaatgctgaaaatgcacttctttctgttcacgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG

Basic information

species Oryza sativa
transcript LOC_Os01g07720.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g07720.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G066362_T01 (Zea mays), 3'ss of exon 11
gtaagttcagttgagttcacttcagttctttttcaccctcactataagttctaaagagcaggtatttctgttaatgttttgatgtgaatgctgaaaatgcacttctttctgttcacgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG
|||||  |||    | || |  |||  | |  | |   | |  |||||| ||  | ||     ||||        |  ||  |||||||||| | ||| ||  |      ||||  || |||||||||||||||||  ||||||| || ||||||||||| ||||  |  |||  | ||||
gtaagcacag----gctccccccag--catcgttagtgttatgataagtcctcgatag-----attt--------ggcttcttgtgaatgct-ataatccaagttcgctcgttcttgtgtgcagGTACTTCTATTCCTTGCCTTTTCTATTGTGGAAAACACGTTACCAGACACCTTTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89162652|gb|CI099344.1|CI099344
EST:     TCATTACACTACCAATTTTATTCCTG                         GTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
genomic: TCATTACACTACCAATTTTATTCCTGgtaagttcag ... acgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
EST: gi|88247507|gb|CI247356.1|CI247356
EST:     TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTG                         GTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
genomic: TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTGgtaagttcag ... acgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
EST: gi|86499763|gb|CI142396.1|CI142396
EST:     TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTG                         GTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
genomic: TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTGgtaagttcag ... acgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
EST: gi|33800779|gb|CF326261.1|CF326261
EST:     TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTG                         GTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
genomic: TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTGgtaagttcag ... acgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
EST: gi|89161465|gb|CI099437.1|CI099437
EST:     CGCACGATCATTACACTACCAATTTTATTCCTG                         GTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
genomic: CGCACGATCATTACACTACCAATTTTATTCCTGgtaagttcag ... acgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
EST: gi|88228317|gb|CI227797.1|CI227797
EST:     TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTG                         GTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
genomic: TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTGgtaagttcag ... acgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
EST: gi|163925452|gb|EG711565.1|EG711565
EST:     TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTG                         GTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
genomic: TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTGgtaagttcag ... acgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
EST: gi|86492318|gb|CI134951.1|CI134951
EST:     TTCATGGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTG                         GTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT
genomic: TTCATTGGCATCGTGTGCGCACGATCATTACACTACCAATTTTATTCCTGgtaagttcag ... acgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatgttttgatgtgaatgctgaaaatgcacttctttctgttcacgtttgcagGTACTTCTATTCACTGCCTTTCCTTTTGTGGAAAACTCGTTTTCCAACATTTGTGAG
                                cttctttctgttcac  CT-rich tract
       ttttgat  TA-rich tract