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...aaacataataccaagtgcttcactacagtaatcaagatagtcgtacaagatttaagcattatttgtagaaccttctgattttgatccagttgtctaccagGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCG
species | Oryza sativa |
transcript | LOC_Os01g07090.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTG GTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATEST: gi|29641054|gb|CB646061.1|CB646061
genomic: CATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGgtatgtgcct ... tgtctaccagGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGAT
EST: CATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTG GTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATEST: gi|29685959|gb|CB682234.1|CB682234
genomic: CATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGgtatgtgcct ... tgtctaccagGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGAT
EST: CATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTG GTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATEST: gi|29685960|gb|CB682235.1|CB682235
genomic: CATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGgtatgtgcct ... tgtctaccagGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGAT
EST: CATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTG GTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGAT
genomic: CATACCAGTTAAGCTCTGAAGCAATTGGTCAAACGTATCTGGATGCACTGgtatgtgcct ... tgtctaccagGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGAT
caagatttaagcattatttgtagaaccttctgattttgatccagttgtctaccagGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCG
tttaagcattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacataataccaagtgcttcactacagtaatcaagatagtcgtacaagatttaagcattatttgtagaaccttctgattttgatccagttgtctaccagGTTTGCACAGTAAATCTTATGGAGGGTGATATGATTGTCAGTGGCTCAGATGGATTTTTTGACAATATATTCGATCAAGAGATCGTTTCTGTCATTTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - -ataccaa
- - - - - - - gtgcttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatcca