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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggttgcctgcttttctcggaattatattccattgtcatactccaatgttggtcggatgtttgtttgtctcatccaaaaagtgattgatccatgttatgtgaatttttccatagAGGCAGATGGATAAGCTCCAAATGCTGGTAGTTTTGAGATGTTATTTCAGGTGAGTGCCGATCTGTTATGATTCTGCAATGCTTTGCTATCCCGTGATTG

Basic information

species Oryza sativa
transcript LOC_Os01g07070.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29668626|gb|CB664901.1|CB664901
EST:     ACCATTTCTATTCCTGTTCATCGGACTTGTACTCAAAACAAGAGCGTAAG                         AGGCAGATGGATAAGCTCCAAATGCTGGTAGTTTTGAGATGTTATTTCAGG
genomic: ACCATTTCTATTCCTGTTCATCGGACTTGTACTCAAAACAAGAGCGTAAGgtaggttgcc ... ttttccatagAGGCAGATGGATAAGCTCCAAATGCTGGTAGTTTTGAGATGTTATTTCAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttgtctcatccaaaaagtgattgatccatgttatgtgaatttttccatagAGGCAGATGGATAAGCTCCAAATGCTGGTAGTTTTGAGATGTTATTTCAGGTGAGTGCCGATCTGTTATGATTCTGCAATGCTTTGCTATCCCGTGATTG
                       gattgat  putative branch site (score: 4)
                                            tttttccat  putative PPT
                                   ttatgtgaattttt  TA-rich tract