1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagtttgctaacattaaattattttgtgtgttaccatagctgatatccttttatatgtattaactattaaaatgccaatttttaattcatttaatcatatgaagtggtttacatttttattctgcaaccgagctcccttgttgtagATGTCTGAAGAAGCAGTCGTGGAGCTTGAATGCGTAAGCGGGAGGTTCAGAAAGGGCCGCTACCAAGTCATAGATGGTTAAGAGGTGGCTGTCTCGTGAA
species | Oryza sativa |
transcript | LOC_Os01g06590.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGACCCAATTAAGTTGTTTCATTCTTTGTGCGCCTCAGCCATGTAAATAA ATGTCTGAAGAAGCAGTCGTGGAGCTTGAATGCGTAAGCGGGAGGTTCAGAEST: gi|29684936|gb|CB681211.1|CB681211
genomic: AGACCCAATTAAGTTGTTTCATTCTTTGTGCGCCTCAGCCATGTAAATAAgtaagtttgc ... cttgttgtagATGTCTGAAGAAGCAGTCGTGGAGCTTGAATGCGTAAGCGGGAGGTTCAGA
EST: AGACCCAATTAAGTTGTTTCATTCTTTGTGCGCCTCAGCCATGTAAATAA ATGTTTGAAGAAGCAGTCGTGGAGCTTGAATGCGTAAGCGGGAGGTTCAGAEST: gi|396941343|gb|HO188552.1|HO188552
genomic: AGACCCAATTAAGTTGTTTCATTCTTTGTGCGCCTCAGCCATGTAAATAAgtaagtttgc ... cttgttgtagATGTCTGAAGAAGCAGTCGTGGAGCTTGAATGCGTAAGCGGGAGGTTCAGA
EST: AGACCCAATTAAGTTGTTTCATTCTTTGTGCGCCTCAGCCATGTAAATAA ATGTCTGAAGAAGCAGTCGTGGAGCTTGAATGCGTAAGCGGGAGGTTCAGA
genomic: AGACCCAATTAAGTTGTTTCATTCTTTGTGCGCCTCAGCCATGTAAATAAgtaagtttgc ... cttgttgtagATGTCTGAAGAAGCAGTCGTGGAGCTTGAATGCGTAAGCGGGAGGTTCAGA
taatcatatgaagtggtttacatttttattctgcaaccgagctcccttgttgtagATGTCTGAAGAAGCAGTCGTGGAGCTTGAATGCGTAAGCGGGAGGTTCAGAAAGGGCCGCTACCAAGTCATAGATGGTTAAGAGGTGGCTGTCTCGTGAA
atttaat putative branch site (score: 5)
ctcccttgtt putative PPT
tttacatttttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttgctaacattaaattattttgtgtgttaccatagctgatatccttttatatgtattaactattaaaatgccaatttttaattcatttaatcatatgaagtggtttacatttttattctgcaaccgagctcccttgttgtagATGTCTGAAGAAGCAGTCGTGGAGCTTGAATGCGTAAGCGGGAGGTTCAGAAAGGGCCGCTACCAAGTCATAGATGGTTAAGAGGTGGCTGTCTCGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG