1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aataaaagttgtgtatctttatatgtactggaattcatgtaaagatctatgtagaaaatcataacatgcatcttttttgttctgcatgctataaatatagATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAG
species | Oryza sativa |
transcript | LOC_Os01g06020.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAG ATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTEST: gi|29638703|gb|CB643712.1|CB643712
genomic: TACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGgtactttcac ... ataaatatagATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATT
EST: TACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAG ATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTEST: gi|88844843|gb|CI022197.1|CI022197
genomic: TACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGgtactttcac ... ataaatatagATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATT
EST: TACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAG ATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTEST: gi|29634058|gb|CB639067.1|CB639067
genomic: TACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGgtactttcac ... ataaatatagATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATT
EST: TACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAG ATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATT
genomic: TACCATCAGCTCGAGCCTTGGCTTATGACATGATTTACAATGGAGTGGAGgtactttcac ... ataaatatagATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATT
tctatgtagaaaatcataacatgcatcttttttgttctgcatgctataaatatagATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAG
tcataac putative branch site (score: 10)
atgctataaatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aataaaagttgtgtatctttatatgtactggaattcatgtaaagatctatgtagaaaatcataacatgcatcttttttgttctgcatgctataaatatagATTGGAGGAGGCAGTTTGAGGATATACAAAAGTGATGTACAACAAAGGATTTTTGAGATCATCGGTATCTCACCCGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
aataaaa
- - - - - gtgtatc
- - - - - - - - - - - -tgtactg
- - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - gtagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgct