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...gaacagcattgtgctgaaaaaagatggcaacaaactttgtatgacatgcaggttgttatattcacattgttttcatatgtatgtgtctgtatgtaataagGTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCTTGGGATGGCTGTTTCACCTGAAAGCCCTCGTTGGCTATTCCAG
species | Oryza sativa |
transcript | LOC_Os01g04190.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTGCTGCTCTGGTAGCTGGATTACCTCTGGCAGGAAACCCTGCTTG GTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCTEST: gi|300215629|gb|HO088255.1|HO088255
genomic: ATTCTTGCTGCTCTGGTAGCTGGATTACCTCTGGCAGGAAACCCTGCTTGgtgagttttt ... atgtaataagGTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCT
EST: ATTCTTGCTGCTCTGGTAGCTGGATTACCTCTGGCAGGAAACCCTGCTTG GTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCT
genomic: ATTCTTGCTGCTCTGGTAGCTGGATTACCTCTGGCAGGAAACCCTGCTTGgtgagttttt ... atgtaataagGTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCT
atgcaggttgttatattcacattgttttcatatgtatgtgtctgtatgtaataagGTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCTTGGGATGGCTGTTTCACCTGAAAGCCCTCGTTGGCTATTCCAG
ttgttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacagcattgtgctgaaaaaagatggcaacaaactttgtatgacatgcaggttgttatattcacattgttttcatatgtatgtgtctgtatgtaataagGTGGAGGACAATGTTCGGAATTTCAATTGTTCCATCCATTTTGCTTGCTCTTGGGATGGCTGTTTCACCTGAAAGCCCTCGTTGGCTATTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
-aacagca
- - - - - -tgctgaa
- - - - - - - - - aaaagatg
- - - - - - - - - - - - - -caacaaa
- - - - - - - - - - - - - - - - - - ttgtatg
- - - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - -gttgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtctg