1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgtatatatagtcttgttctagctagtgcagtcgcagtagcaaaatcgtactagtagcagtcatatgctcatcactacagagatatattactgaactctccagctttggatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGGAATCTTGGCTTTCTACCTTGGCTTTGAGTGGATCCAG
species | Oryza sativa |
transcript | 13114.m00108 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGGAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|86906380|gb|CI294503.1|CI294503
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|14980567|gb|BI305245.1|BI305245
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGNGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCANATGAGGAAGATATATTCCCCTCTTCTTGAAGEST: gi|33679460|gb|CF307699.1|CF307699
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAG
EST: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAG CATGGTATGAAAGGCGGCAAAT
genomic: AGCAATGCGTTCAAATACTGGGCGAGAGAATCTCAAGAAACTATTTGCAGgtgtatatat ... gatttttcagCATGGTATGAAAGGCGGCAAAT
tatgctcatcactacagagatatattactgaactctccagctttggatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGGAATCTTGGCTTTCTACCTTGGCTTTGAGTGGATCCAG
tttttc CT-rich tract
agatatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtatatatagtcttgttctagctagtgcagtcgcagtagcaaaatcgtactagtagcagtcatatgctcatcactacagagatatattactgaactctccagctttggatttttcagCATGGTATGAAAGGCGGCAAATGAGGAAGATATATTCCCCTCTTCTTGAAGGAATCTTGGCTTTCTACCTTGGCTTTGAGTGGATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA