1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aagaaaaagctaaaacaaaacaaaaacttctttgttgaaggtacaatgtatccgtgatcatacttagttctgtgactatctttttcatttgaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG
species | Oryza sativa |
transcript | 13113.m00214 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|58588707|gb|CF987015.1|CF987015
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGAT-AAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|58687450|gb|CK076137.1|CK076137
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: GAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|58688418|gb|CK077105.1|CK077105
genomic: GAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|58692944|gb|CK081631.1|CK081631
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: CCCAGCATGTGATTGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGEST: gi|29638632|gb|CB643641.1|CB643641
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAG
EST: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|33681193|gb|CF309432.1|CF309432
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|58612906|gb|CK040618.1|CK040618
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: CCCAGCATGTGATTGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|33681075|gb|CF309314.1|CF309314
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|58689718|gb|CK078405.1|CK078405
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|29668896|gb|CB665171.1|CB665171
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGEST: gi|58691639|gb|CK080326.1|CK080326
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
EST: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATCAAGGGCCAAATTGAG AACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
genomic: CCCAACATGTGATCGAGAAAAGGGTTGCTCAGATAAAGGGCCAAATTGAGgtattacagt ... gaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGG
atgtatccgtgatcatacttagttctgtgactatctttttcatttgaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG
cttcc CT-rich tract
tatctttttcattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagaaaaagctaaaacaaaacaaaaacttctttgttgaaggtacaatgtatccgtgatcatacttagttctgtgactatctttttcatttgaacttccagAACTCAAGTGAGAGGTACCAGAAGAAGATATTGGGTGAGAGAATAGCAAGGTTATGTGGTGGAATTGCAATCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
aagaaaa
- - - -agctaaa
- - - - - - aaacaaa
- - - - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - tgtatcc