1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttatttctcatgattcttaagcatgctctaattcttgcacatgcccccatatatgattacttatcctaatacattcattttgtgatctaatcatccttagGTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTACTCACTGGTTTAAG
species | Oryza sativa |
transcript | LOC_Os12g40830.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAG GTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTAEST: gi|427643|gb|D23776.1|D23776
genomic: AAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAGgtgatttaat ... tcatccttagGTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTA
EST: ATCTGTTTATCAACAGAAG GTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTAEST: gi|58661072|gb|CK049752.1|CK049752
genomic: ATCTGTTTATCAACAGAAGgtgatttaat ... tcatccttagGTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTA
EST: AAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAG GTTGTCCCAGTTGCTACAATGCTT
genomic: AAGGGAAACTATATGTCCCTCAGGATTTAATATCTGTTTATCAACAGAAGgtgatttaat ... tcatccttagGTTGTCCCAGTTGCTACAATGCTT
cccatatatgattacttatcctaatacattcattttgtgatctaatcatccttagGTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTACTCACTGGTTTAAG
tcatcctt CT-rich tract
taatacattcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttctcatgattcttaagcatgctctaattcttgcacatgcccccatatatgattacttatcctaatacattcattttgtgatctaatcatccttagGTTGTCCCAGTTGCTACAATGCTTACACCTAACCAATTTGAAGTTGAACTACTCACTGGTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG