1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gttggattgtgagttaattaataagtttatggaaaattgttcttcttatactcatgtgtgttcttacaacagGTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGGTGGAGTTTGAAGGGAATGGGGGCCATGCTGGAGCAGTGCTCATGCCTGC
species | Oryza sativa |
transcript | LOC_Os12g40550.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAG GTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGGEST: gi|29665068|gb|CB661343.1|CB661343
genomic: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAGgttggattgt ... cttacaacagGTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGG
EST: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAG GTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGGEST: gi|25801425|gb|CA757386.1|CA757386
genomic: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAGgttggattgt ... cttacaacagGTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGG
EST: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAG GTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGGEST: gi|27578088|gb|CB000783.1|CB000783
genomic: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAGgttggattgt ... cttacaacagGTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGG
EST: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAG GTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGGEST: gi|58682834|gb|CK071521.1|CK071521
genomic: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAGgttggattgt ... cttacaacagGTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGG
EST: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAG GTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGG
genomic: TGCTTTTGTAGAATTGCACATTGAACAGGGCCCCATTTTGGAAAAAGAAGgttggattgt ... cttacaacagGTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGG
ttaataagtttatggaaaattgttcttcttatactcatgtgtgttcttacaacagGTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGGTGGAGTTTGAAGGGAATGGGGGCCATGCTGGAGCAGTGCTCATGCCTGC
ttcttac putative branch site (score: 37)
tgttctt CT-rich tract
aaaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggattgtgagttaattaataagtttatggaaaattgttcttcttatactcatgtgtgttcttacaacagGTATCAAAATTGGCGTTGTCACTGCTATTGCTGCTCCTGCAAGTATTAAGGTGGAGTTTGAAGGGAATGGGGGCCATGCTGGAGCAGTGCTCATGCCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG