1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catctgtcataatttgttgaaataaggagggtagtccaacagaagatgataattgtttcactgccaacctgataaactaacctggtatatgctatttcagGTGTTCAATGAGATAAGCTCCAGGGAGATGGAGAAGATCAACGTGCTGAGGGGCATACTGAAGAACTACGTCTTCTTGGGTGTTCTCACCAGCACGGTAG
species | Oryza sativa |
transcript | LOC_Os12g39660.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGTTGTGCTAAATACAATTATTTTCAACTCGTTTGTCTTCTGCCAG GTGTTCAATGAGATAAGCTCCAGGGAGATGGAGAAGATCATCGTGCTGAGGEST: gi|58655627|gb|CK044307.1|CK044307
genomic: CTGAAGTTGTGCTAAATACAATTATTTTCAACTCGTTTGTCTTCTGCCAGgtatgtgtac ... gctatttcagGTGTTCAATGAGATAAGCTCCAGGGAGATGGAGAAGATCAACGTGCTGAGG
EST: CTGAAGTTGTGCTAAATACAATTATTTTCAACTCGTTTGTCTTCTGCCAG GTGTTCCAATGAGATAAGCTCCAGGGAGATGGAGAAGATCAACGTGCTGAGEST: gi|25806930|gb|CA762891.1|CA762891
genomic: CTGAAGTTGTGCTAAATACAATTATTTTCAACTCGTTTGTCTTCTGCCAGgtatgtgtac ... gctatttcagGTGTTC-AATGAGATAAGCTCCAGGGAGATGGAGAAGATCAACGTGCTGAG
EST: CTGAAGTTGTGCTAAATACAATTATTTTCAACTCGTTTGTCTTCTGCCAG GTGTTCAATGAGATAAGCTCCAGGGAGATGGAGAAGATCAACGTGCTGAGGEST: gi|218492595|gb|FG964272.1|FG964272
genomic: CTGAAGTTGTGCTAAATACAATTATTTTCAACTCGTTTGTCTTCTGCCAGgtatgtgtac ... gctatttcagGTGTTCAATGAGATAAGCTCCAGGGAGATGGAGAAGATCAACGTGCTGAGG
EST: CTGAAGTTGTGCTAAATACAATTATTTTCAACTCGTATGTCTTCTGCCAG GTGTTCAATGAGATAAGCTCCAGAGAGATGGAGAAGA
genomic: CTGAAGTTGTGCTAAATACAATTATTTTCAACTCGTTTGTCTTCTGCCAGgtatgtgtac ... gctatttcagGTGTTCAATGAGATAAGCTCCAGGGAGATGGAGAAGA
atgataattgtttcactgccaacctgataaactaacctggtatatgctatttcagGTGTTCAATGAGATAAGCTCCAGGGAGATGGAGAAGATCAACGTGCTGAGGGGCATACTGAAGAACTACGTCTTCTTGGGTGTTCTCACCAGCACGGTAG
aactaac putative branch site (score: 34)
ctatttc putative PPT
ataaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catctgtcataatttgttgaaataaggagggtagtccaacagaagatgataattgtttcactgccaacctgataaactaacctggtatatgctatttcagGTGTTCAATGAGATAAGCTCCAGGGAGATGGAGAAGATCAACGTGCTGAGGGGCATACTGAAGAACTACGTCTTCTTGGGTGTTCTCACCAGCACGGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
catctgt
- - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - caacaga
- - - - - - - - - - - - - - - - - - - - - - gatgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa