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gtaacctcatatttctttctttcccctctgaagtctgctgcctgttagtacatatcacttaaatttggatacaaattgaatttcactgcctctgcatgcaaaatattgaatcttgaattgaggttgatgtaatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGACAATGGTTGCAGGTGGTGGTGCTAGTGTCATATATGCTGATACT
species | Oryza sativa |
transcript | LOC_Os12g37870.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAG ACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGEST: gi|33807858|gb|CF329821.1|CF329821
genomic: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAGgtaacctcat ... aatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGG
EST: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAG ACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGEST: gi|29669993|gb|CB666268.1|CB666268
genomic: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAGgtaacctcat ... aatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGG
EST: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAG AACA-GCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGEST: gi|58600487|gb|CK011015.1|CK011015
genomic: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAGgtaacctcat ... aatttttcagA-CAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTG
EST: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAG ACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGEST: gi|58590032|gb|CF988340.1|CF988340
genomic: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAGgtaacctcat ... aatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGG
EST: GAACTGGATGAGAAG ACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGEST: gi|29680113|gb|CB676388.1|CB676388
genomic: GAACTGGATGAGAAGgtaacctcat ... aatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGG
EST: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAG ACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGEST: gi|29638061|gb|CB643070.1|CB643070
genomic: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAGgtaacctcat ... aatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGG
EST: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAG ACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGEST: gi|33800763|gb|CF326252.1|CF326252
genomic: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAGgtaacctcat ... aatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGG
EST: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAG ACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGEST: gi|58589196|gb|CF987504.1|CF987504
genomic: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAGgtaacctcat ... aatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGG
EST: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAG ACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGG
genomic: GAAGAGTCCTCAGCCCCTCTGAAAGCTTTATCCATGAACTGGATGAGAAGgtaacctcat ... aatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGG
ctgcctctgcatgcaaaatattgaatcttgaattgaggttgatgtaatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGACAATGGTTGCAGGTGGTGGTGCTAGTGTCATATATGCTGATACT
ggttgat putative branch site (score: 64)
tttttc putative PPT
aaaatattgaatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacctcatatttctttctttcccctctgaagtctgctgcctgttagtacatatcacttaaatttggatacaaattgaatttcactgcctctgcatgcaaaatattgaatcttgaattgaggttgatgtaatttttcagACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGACAATGGTTGCAGGTGGTGGTGCTAGTGTCATATATGCTGATACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT