1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctcatgtccattgctcagcatttatttttcttatttcctattttagatagcataatatttgggacattgatttatgtgagctgcttatttccatttacagGGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTGACAGATAGTGCTAAAGAAATAAAGACAAAG
species | Oryza sativa |
transcript | LOC_Os12g35570.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTACCAGAAACCATCATTAATTGAATCGAGATTTTTCCCTGCTCTTCAG GGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTGEST: gi|117242702|gb|CT843523.1|CT843523
genomic: GTTACCAGAAACCATCATTAATTGAATCGAGATTTTTCCCTGCTCTTCAGgtacgttttt ... ccatttacagGGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTG
EST: GTTACCAGAAACCATCATTAATTGAATCGAGATTTTTCCCTGCTCTTCAG GGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTGEST: gi|29674926|gb|CB671201.1|CB671201
genomic: GTTACCAGAAACCATCATTAATTGAATCGAGATTTTTCCCTGCTCTTCAGgtacgttttt ... ccatttacagGGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTG
EST: GTTACCAGAAACCATCATTAATTGAATCGAGATTTTTCCCTGCTCTTCAG GGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTG
genomic: GTTACCAGAAACCATCATTAATTGAATCGAGATTTTTCCCTGCTCTTCAGgtacgttttt ... ccatttacagGGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTG
gatagcataatatttgggacattgatttatgtgagctgcttatttccatttacagGGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTGACAGATAGTGCTAAAGAAATAAAGACAAAG
cattgat putative branch site (score: 4)
cttatttcc putative PPT
ataatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcatgtccattgctcagcatttatttttcttatttcctattttagatagcataatatttgggacattgatttatgtgagctgcttatttccatttacagGGGGAGAACACAAAAATGTCGGCCAGTGATCCAAATTCTGCAATATATGTGACAGATAGTGCTAAAGAAATAAAGACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA