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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatctcttgtatctcactgctgttggtatgcaaaggtcactctacttctttgttttgatcagtcttttcaagttataaggatacctctcctctcaccttttttacttcttttagtagtggaactagggacagaagaaatatttatacatgggacttatatagcaagaaccacttgcttcttttgatgtctagGTCCAATGGGGGAACAGTGTTATTCTTGTTGGCGGTAAAACTGAACCTGCATCCGATCGTTTAGCAG

Basic information

species Oryza sativa
transcript LOC_Os12g35350.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33675705|gb|CF303944.1|CF303944
EST:     CGCCAAACAGACGTCCGTCAAAGTTGCCAGCCTGCAAAGGTCATTGTCTG                         GTCCAATGGGGGAACAGTGTTATTCTTGTTGGCGGTAAAACTGAACCTGCA
genomic: CGCCAAACAGACGTCCGTCAAAGTTGCCAGCCTGCAAAGGTCATTGTCTGgtatatctct ... tgatgtctagGTCCAATGGGGGAACAGTGTTATTCTTGTTGGCGGTAAAACTGAACCTGCA
EST: gi|66916955|gb|CX103803.1|CX103803
EST:     CGCCAAACAGACGTCCGTCAAAGTTGCCAGCCTGCAAAGGTCATTGTCTG                         GTCCAATGGGGGAACAGTGTTATTCTTGTTGGCGGTAAAACTGAACCTGCA
genomic: CGCCAAACAGACGTCCGTCAAAGTTGCCAGCCTGCAAAGGTCATTGTCTGgtatatctct ... tgatgtctagGTCCAATGGGGGAACAGTGTTATTCTTGTTGGCGGTAAAACTGAACCTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttatacatgggacttatatagcaagaaccacttgcttcttttgatgtctagGTCCAATGGGGGAACAGTGTTATTCTTGTTGGCGGTAAAACTGAACCTGCATCCGATCGTTTAGCAG
                                          ttttgat  putative branch site (score: 4)
                               ccacttgcttctttt  CT-rich tract
               acttatata  TA-rich tract