1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctgtttatgtttcagttctgcctatgttcgtttgtattttactagacttcatatataggcactaattaattattgacaagccaatctacatacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAGGAGAACCTACATCATAGATGTTCCTGGAGCTCTATTAATTTCGTCCAC
species | Oryza sativa |
transcript | LOC_Os12g19304.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|66918937|gb|CX105785.1|CX105785
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|88535214|gb|CI464000.1|CI464000
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: AGCCCATTTGGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|16576824|gb|BI804120.1|BI804120
genomic: AGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: GGTTGCAGAGTCTTGGGTGTGAGCCCATTTTGCATATGCGACATTT-CAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|88234139|gb|CI233988.1|CI233988
genomic: GGTTGCAGAG-GTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|12404964|gb|AU166565.1|AU166565
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|88243130|gb|CI244252.1|CI244252
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTTCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|9865018|gb|AU100768.1|AU100768
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|88266754|gb|CI377656.1|CI377656
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|88543406|gb|CI473410.1|CI473410
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|88828854|gb|CI073724.1|CI073724
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|86425971|gb|CI071068.1|CI071068
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAEST: gi|86523129|gb|CI163335.1|CI163335
genomic: TGGTTGCAGAGGTTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
EST: TTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAG GCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
genomic: TTGGGTGTGAGCCCATTTTGCATATGCGACATTTCCAGgtttgccacc ... tacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAA
acttcatatataggcactaattaattattgacaagccaatctacatacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAGGAGAACCTACATCATAGATGTTCCTGGAGCTCTATTAATTTCGTCCAC
tattgac putative branch site (score: 2)
taattaattattgaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtttatgtttcagttctgcctatgttcgtttgtattttactagacttcatatataggcactaattaattattgacaagccaatctacatacatttcagGCAACAAAGAGATTACCAGACAAGCTCGTGCACCATGTTATCCATGGTAAAGGAGAACCTACATCATAGATGTTCCTGGAGCTCTATTAATTTCGTCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - -tgtttca
- - - - - - - -ttctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagccaa