1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtataatattttcttcagatgcattaaaattcttgttgtacctcatcatatttggcaacttcagtgcttatttactgtttgcatatttcatttctgttgtttgtgcatctccactgtaacgtcaagctatgcaaattgtacagGTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAG
species | Oryza sativa |
transcript | LOC_Os12g13460.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGGTTGGTTGTGGATCGACCATACAAAGCGGGAGAACCAATAATCGTCTG GTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGAEST: gi|33676615|gb|CF304854.1|CF304854
genomic: CGGTTGGTTGTGGATCGACCATACAAAGCGGGAGAACCAATAATCGTCTGgtataatatt ... aattgtacagGTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGA
EST: CGGTTGGTTGTGGATCGACCATACAAAGCGGGAGAACCAATAATCGTCTG GTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGA
genomic: CGGTTGGTTGTGGATCGACCATACAAAGCGGGAGAACCAATAATCGTCTGgtataatatt ... aattgtacagGTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGA
catttctgttgtttgtgcatctccactgtaacgtcaagctatgcaaattgtacagGTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAG
ctgtaac putative branch site (score: 8)
aaattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataatattttcttcagatgcattaaaattcttgttgtacctcatcatatttggcaacttcagtgcttatttactgtttgcatatttcatttctgttgtttgtgcatctccactgtaacgtcaagctatgcaaattgtacagGTGTGGGCCACAGCCTAACTCTAGATTGCTCCTCAACTACGGTTTTATTGACGAAGATAATCCATATGATCGTATAGTGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA