1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...taccttggttcttatggttaaacaatagatgtgatatacattgagcattttctggcctactgatggaaattatctaactcagttttgcttctgctaatagAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATG
species | Oryza sativa |
transcript | LOC_Os12g13130.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTCATCTTTGTGAG AGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTEST: gi|88688437|gb|CI732013.1|CI732013
genomic: GTCATCTTTGTGAGgttcttatcc ... ctgctaatagAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGT
EST: GTCATCTTTGTGAG AGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTEST: gi|29645805|gb|CB650812.1|CB650812
genomic: GTCATCTTTGTGAGgttcttatcc ... ctgctaatagAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGT
EST: AGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTEST: gi|29645769|gb|CB650776.1|CB650776
genomic: AGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAGgttcttatcc ... ctgctaatagAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGT
EST: AGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAG AGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGT
genomic: AGAGTAAATGCAGTGCAACTGCAGCTGCAAGGAATCGTCATCTTTGTGAGgttcttatcc ... ctgctaatagAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGT
cattttctggcctactgatggaaattatctaactcagttttgcttctgctaatagAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATG
atctaac putative branch site (score: 2)
ttttgcttct putative PPT
aaattatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taccttggttcttatggttaaacaatagatgtgatatacattgagcattttctggcctactgatggaaattatctaactcagttttgcttctgctaatagAGCCTTGCAGATAGTTGCTTTCCTATTAATCAAGGGCAATCTGCCAGCCGTCTTCATG
- - -tggttct
- - - - - - - - - - aacaata
- - - - - - - - - - - - - - -tgtgata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgct