1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attacattgtgaaacgaagagaatacagtttataataagatattatcaaccaatggcattgtgactgatcttttttttttctttcgttaacgtggtgcagGTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATATCGCGATTGGCTCTTGTGTCGTGGCGGGAGGCGTAACGAATTTGCCGAA
species | Oryza sativa |
transcript | LOC_Os12g07020.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGA GTGTGTACGCATGCC-TGGTGCTGACGTGGACGAATGCACACGGTGCGATAEST: gi|86848842|gb|CI295675.1|CI295675
genomic: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGAgtatgtgtat ... cgtggtgcagGTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATA
EST: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGA GTGTGTACGCATGCEST: gi|86503583|gb|CI146216.1|CI146216
genomic: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGAgtatgtgtat ... cgtggtgcagGTGTGTACGCATGC
EST: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGA GTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATAEST: gi|87020295|gb|CI261159.1|CI261159
genomic: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGAgtatgtgtat ... cgtggtgcagGTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATA
EST: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGG GTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATAEST: gi|86493868|gb|CI136501.1|CI136501
genomic: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGAgtatgtgtat ... cgtggtgcagGTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATA
EST: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGA GTGTGTACGCATGCCNTGGTGCTGACGTGGACGAATGCACACGGTGCGATAEST: gi|5455336|gb|AU075579.1|AU075579
genomic: ACCACCAACAGCGCAGCGAAGAAGAAGAAAACGAAGACGGTGATGATTGAgtatgtgtat ... cgtggtgcagGTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATA
EST: CGAAGAAGAAGAAAACGAAGACGGTGATGATTGA GTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATA
genomic: CGAAGAAGAAGAAAACGAAGACGGTGATGATTGAgtatgtgtat ... cgtggtgcagGTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATA
tcaaccaatggcattgtgactgatcttttttttttctttcgttaacgtggtgcagGTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATATCGCGATTGGCTCTTGTGTCGTGGCGGGAGGCGTAACGAATTTGCCGAA
cgttaac putative branch site (score: 18)
tcttttttttttcttt CT-rich tract
atcttttttttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attacattgtgaaacgaagagaatacagtttataataagatattatcaaccaatggcattgtgactgatcttttttttttctttcgttaacgtggtgcagGTGTGTACGCATGCCCTGGTGCTGACGTGGACGAATGCACACGGTGCGATATCGCGATTGGCTCTTGTGTCGTGGCGGGAGGCGTAACGAATTTGCCGAA
- - - - - -aaacgaa
- - - - - - - - - - - - - - - - - - - - - - - caaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggcatt