Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattacattatattattcgggttcatagatacattttccttctttcgtcattgatcgatcaaaatgaatatttatacttgcctctttctctttcttactaccagCCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTTGGGAGGTATTTTCTATTAAAAACCGGTTCTTCATGTTCAATGAGATAGTTTGCAA

Basic information

species Oryza sativa
transcript LOC_Os12g03860.7
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86902475|gb|CI304294.1|CI304294
EST:     GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAG                         CCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTTGGGAGG
genomic: GGGGGATAGGTCTTGTAGTTGGCCCAGCAACTGGGGGATACCTCGCACAGgtaatattac ... ttactaccagCCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTTGGGAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgatcgatcaaaatgaatatttatacttgcctctttctctttcttactaccagCCTGTCAAACAATATCCTCATATTTTTCATGAGAAGTCAATATTTGGGAGGTATTTTCTATTAAAAACCGGTTCTTCATGTTCAATGAGATAGTTTGCAA
                                          ttcttac  putative branch site (score: 2)
                     tttatacttgcctctt  CT-rich tract
        atcaaaatgaatattt  TA-rich tract