1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtttttatagttcttttggtacttcttgcaatttctcttttccatttattgaccacatgtacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG
species | Oryza sativa |
transcript | LOC_Os12g03060.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGEST: gi|58668824|gb|CK057510.1|CK057510
genomic: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCAT GGATTGGTGGCATCACAAAACTAAAAAGAACCEST: gi|29657293|gb|CB653568.1|CB653568
genomic: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAA-CTAAAAAGAACC
EST: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGEST: gi|29687248|gb|CB683523.1|CB683523
genomic: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTG
EST: GGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGEST: gi|86831384|gb|CI299442.1|CI299442
genomic: GGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGEST: gi|27576657|gb|CA999351.1|CA999351
genomic: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGEST: gi|29686826|gb|CB683101.1|CB683101
genomic: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGEST: gi|29657294|gb|CB653569.1|CB653569
genomic: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGEST: gi|29618675|gb|CB623687.1|CB623687
genomic: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTG
genomic: GTTCTGTAAGTGAAGATCTGAAGAAACATCACGACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTG
tttggtacttcttgcaatttctcttttccatttattgaccacatgtacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG
tattgac putative branch site (score: 38)
atttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttatagttcttttggtacttcttgcaatttctcttttccatttattgaccacatgtacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCAAGTGGACAGACTGATCTGGTTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG