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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtagtcgttgtctatactatcatgaatataaatcaagtatagattgtatcatcttattgcttggcaaatactaatttggtaagaaccaccacatttgcagCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCT

Basic information

species Oryza sativa
transcript LOC_Os12g01740.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g01740.1 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G162702_T01 (Zea mays), 3'ss of exon 3
gtagtcgttgtctatactatcatgaatataaatcaagtatagattgtatcatcttattgcttggcaaatactaatttggtaagaaccaccacatttgcagCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCT
    | |   ||     | |  ||| || |   |   | |   | |     | | | || |||  ||| |  |||||| ||   |   | | || | ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||| |||||||| ||||||||||| ||||||||||| 
aacatagccatcccctgtttggtgattagatgacctattttcttggctatctgtcactggttgtaaaacataaatttgatatagagtgctaaatctacagCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCACCGTGACATCAAGTCCAGCAATATCTTGATTGACGATGAGTTTAATGCCAAAATATCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcatcttattgcttggcaaatactaatttggtaagaaccaccacatttgcagCCTTGCTTACTTACATGAGGCAATTGAACCAAAAGTTGTGCATCGTGATATCAAGGCCAGTAATATATTGATTGATGATGAGTTTAACGCCAAAATATCT
                       tactaat  putative branch site (score: 1)
                    aaatactaattt  TA-rich tract